PyMOL(TM) 2.3.2 - Incentive Product
Copyright (C) Schrodinger, LLC
This Executable Build integrates and extends Open-Source PyMOL.
Detected OpenGL version 2.1. Shaders available.
Detected GLSL version 1.20.
OpenGL graphics engine:
GL_VENDOR: Intel Inc.
GL_RENDERER: Intel HD Graphics 3000 OpenGL Engine
GL_VERSION: 2.1 INTEL-10.4.14
License Expiry date: 01-mar-2020
License expired
Detected 4 CPU cores. Enabled multithreaded rendering.
Setting: bg_rgb set to white.
CmdLoad: PDB-string loaded into object "T0957s2_QARESE_best_RaptorX-Contact_TS4", state 1.
CmdLoad: PDB-string loaded into object "T0957s2_QARESE_loss_GaussDCA_TS3", state 1.
CmdLoad: PDB-string loaded into object "T0957s2_QDeep_best_RBO-Aleph_TS2", state 1.
CmdLoad: PDB-string loaded into object "T0957s2_QDeep_loss_HMSCasper-Refiner_TS2", state 1.
ObjectMolecule: Read crystal symmetry information.
CmdLoad: PDB-string loaded into object "T0957s2", state 1.
Executive: Colored 1272 atoms and 1 object.
Executive: Colored 1316 atoms and 1 object.
Match: read scoring matrix.
Match: assigning 164 x 158 pairwise scores.
MatchAlign: aligning residues (164 vs 158)...
MatchAlign: score 837.000
ExecutiveAlign: 158 atoms aligned.
ExecutiveRMS: 9 atoms rejected during cycle 1 (RMSD=4.45).
ExecutiveRMS: 8 atoms rejected during cycle 2 (RMSD=3.59).
ExecutiveRMS: 7 atoms rejected during cycle 3 (RMSD=3.12).
ExecutiveRMS: 3 atoms rejected during cycle 4 (RMSD=2.80).
ExecutiveRMS: 2 atoms rejected during cycle 5 (RMSD=2.66).
Executive: RMSD = 2.590 (129 to 129 atoms)
Executive: object "aln_T0957s2_QARESE_best_RaptorX-Contact_TS4_to_T0957s2" created.
PyMOL>png /Volumes/Untitled/T0957s2_QARESE_best_cmp.png, 0, 0, -1, ray=0
ScenePNG: wrote 640x476 pixel image to file "/Volumes/Untitled/T0957s2_QARESE_best_cmp.png".
Match: read scoring matrix.
Match: assigning 164 x 158 pairwise scores.
MatchAlign: aligning residues (164 vs 158)...
MatchAlign: score 837.000
ExecutiveAlign: 158 atoms aligned.
ExecutiveRMS: 8 atoms rejected during cycle 1 (RMSD=10.18).
ExecutiveRMS: 9 atoms rejected during cycle 2 (RMSD=8.91).
ExecutiveRMS: 3 atoms rejected during cycle 3 (RMSD=7.71).
ExecutiveRMS: 4 atoms rejected during cycle 4 (RMSD=7.40).
ExecutiveRMS: 4 atoms rejected during cycle 5 (RMSD=7.04).
Executive: RMSD = 6.666 (130 to 130 atoms)
Executive: object "aln_T0957s2_QDeep_best_RBO-Aleph_TS2_to_T0957s2" created.
Executive: Colored 1316 atoms and 1 object.
PyMOL>png /Volumes/Untitled/T0957s2_QDeep_best_cmp.png, 0, 0, -1, ray=0
ScenePNG: wrote 640x476 pixel image to file "/Volumes/Untitled/T0957s2_QDeep_best_cmp.png".
Executive: Colored 1316 atoms and 1 object.
Executive: Colored 1316 atoms and 1 object.
PyMOL>png /Volumes/Untitled/T0957s2_best_all.png, 0, 0, -1, ray=0
ScenePNG: wrote 640x476 pixel image to file "/Volumes/Untitled/T0957s2_best_all.png".
Match: read scoring matrix.
Match: assigning 164 x 158 pairwise scores.
MatchAlign: aligning residues (164 vs 158)...
MatchAlign: score 837.000
ExecutiveAlign: 158 atoms aligned.
ExecutiveRMS: 3 atoms rejected during cycle 1 (RMSD=14.55).
Executive: RMSD = 14.038 (155 to 155 atoms)
Executive: object "aln_T0957s2_QARESE_loss_GaussDCA_TS3_to_T0957s2" created.
Executive: Colored 1316 atoms and 1 object.
PyMOL>png /Volumes/Untitled/T0957s2_QARESE_loss_cmp.png, 0, 0, -1, ray=0
ScenePNG: wrote 640x476 pixel image to file "/Volumes/Untitled/T0957s2_QARESE_loss_cmp.png".
Executive: Colored 1299 atoms and 1 object.
Match: read scoring matrix.
Match: assigning 164 x 158 pairwise scores.
MatchAlign: aligning residues (164 vs 158)...
MatchAlign: score 837.000
ExecutiveAlign: 158 atoms aligned.
ExecutiveRMS: 2 atoms rejected during cycle 1 (RMSD=6.93).
ExecutiveRMS: 1 atoms rejected during cycle 2 (RMSD=6.75).
Executive: RMSD = 6.683 (155 to 155 atoms)
Executive: object "aln_T0957s2_QDeep_loss_HMSCasper-Refiner_TS2_to_T0957s2" created.
PyMOL>png /Volumes/Untitled/T0957s2_QDeep_loss_cmp.png, 0, 0, -1, ray=0
ScenePNG: wrote 640x476 pixel image to file "/Volumes/Untitled/T0957s2_QDeep_loss_cmp.png".
原文：https://www.cnblogs.com/Marigolci/p/14714202.html