alphafold2的几项便利性修改。

 1 #Run alphafold2
 2 # conda activate af2
 3 # run_alphafold.py --fasta_paths=Test.fasta --max_template_date=2020-05-14
 4 
 5 #Changelog
 6 1. vim /home/wangq/Programs/miniconda3/envs/af2/lib/python3.8/site-packages/absl/flags/_validators.py
 7 # annotate line 202-206
 8 2. vim ~/Programs/alphafold2/run_alphafold.py
 9 # add !/usr/bin/env python3
10 3. chmod +x ~/Programs/alphafold2/run_alphafold.py
11 4. vim ~/Programs/alphafold2/run_alphafold.py
12 # add time module
13 5. vim ./alphafold/data/tools/jackhmmer.py
14 # change cpu:8 to cpu:20
15 6. vim ./alphafold/data/tools/hhblits.py
16 # change cpu:4 to cpu:20
17 7. vim alphafold/common/residue_constants.py
18 #change line 23 28 409
19     import subprocess
20     AF2_PATH = subprocess.getoutput("echo $alphafold2")
21     stereo_chemical_props_path = (f‘{AF2_PATH}/alphafold/common/stereo_chemical_props.txt‘)