安装依赖库
sudo aptitude -y install tcl-dev tk-dev sudo aptitude -y install libicu-dev liblzma-dev sudo aptitude -y install libpng12-dev libjpeg-dev libtiff4-dev libcairo2-dev
安装R
wget http://mirrors.xmu.edu.cn/CRAN/src/base/R-3/R-3.1.1.tar.gz -nc -O ~/download/R-3.1.1.tar.gz tar zxvf ~/download/R-3.1.1.tar.gz -C /tmp/ cd /tmp/R-3.1.1/ ./configure --enable-R-shlib --with-tcl-config=/usr/lib/tclConfig.sh --with-tk-config=/usr/lib/tkConfig.sh make sudo make install
安装rstudio
wget http://download1.rstudio.org/rstudio-0.98.978-amd64.deb -nc -O ~/download/rstudio-0.98.978-amd64.deb sudo dpkg -i ~/download/rstudio-0.98.978-amd64.deb
安装package(在R中运行)
install.packages(c("ggplot2", "DMwR", "vegan", "ade4", "geoR", "caret", "pcaPP", "rJava",
"indicspesies", "roxygen2", "snowfall", "rpf", "numDeriv", "psych",
"geosphere"), repos = "http://172.30.0.75/cran")
source("http://bioconductor.org/biocLite.R")
biocLite()
biocLite(c("BiocInstaller", "qvalue", "DirichletMultinomial", "impute", "minet",
"GO.db", "org.Hs.eg.db", "org.Mm.eg.db"))
install.packages("WGCNA", repos = "http://172.30.0.75/cran")
安装源代码版OpenMx
sudo aptitude install -y curl cd ~/download svn checkout "http://openmx.psyc.virginia.edu/svn" OpenMx cd OpenMx/truck sudo make install
.Rprofile设置
#
options(papersize="a4")
options(editor="vim")
options(tab.width = 2)
options(width = 130)
#
options(prompt="> ")
options(continue="+ ")
#
.First <- function() {
library(utils)
if(interactive()) try(loadhistory("~/.Rhistory"))
}
# ......
.Last <- function() {
if(interactive()) try(savehistory("~/.Rhistory"))
}
原文：http://my.oschina.net/u/1791586/blog/335456