1.
Monya Baker (Editor at Nature)
De novo genome assembly: what every biologist should know
Nature Methods 9, 333–337 (2012) doi:10.1038/nmeth.1935
2.
Paul Flicek & Ewan Birney (European Bioinformatics Institute)
Sense from sequence reads: methods for alignment and assembly
Nature Methods 6, S6 - S12 (2009)
3.
Mihai Pop
(Center for Bioinformatics and Computational Biology, University of
Maryland)
Genome assembly reborn: recent computational challenges
Brief Bioinform (2009) doi: 10.1093/bib/bbp026
4.
Ewan Birney (European Bioinformatics Institute)
Assemblies: the good, the bad, the ugly
Nature Methods 8, 59–60 (2011) doi:10.1038/nmeth0111-59
5.
Jason R. Miller, Sergey Koren, and Granger Sutton
(J. Craig Venter Institute)
Assembly Algorithms for Next-Generation Sequencing Data
Genomics. 2010 Jun;95(6):315-27. Epub 2010 Mar 6.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874646/?tool=pubmed
6.
Phillip E C Compeau, Pavel A Pevzner & Glenn Tesler
(University of California San Diego)
How to apply de Bruijn graphs to genome assembly
Nature Biotechnology 29, 987–991 (2011) doi:10.1038/nbt.2023
7.
Michael C. Schatz, Arthur L. Delcher and Steven L. Salzberg
(Center for Bioinformatics and Computational Biology, University of
Maryland)
Assembly of large genomes using second-generation sequencing
Genome Res. 2010. 20: 1165-1173 doi:10.1101/gr.101360.109
8.
Can Alkan, Saba Sajjadian & Evan E Eichler
(Department of Genome Sciences, University of Washington)
Limitations of next-generation genome sequence assembly
Nature Methods 8, 61–65 (2011) doi:10.1038/nmeth.1527
9.
Steven L. Salzberg and James A. Yorke
(University of Maryland)
Beware of mis-assembled genomes
Bioinformatics (2005) 21 (24): 4320-4321. doi: 10.1093/bioinformatics/bti769
http://dx.doi.org/doi:10.1093/bioinformatics/bti769